Natural scienceBioinformaticsBioinformatics algorithmsAlignment algorithms

Multiple alignment

Theory

Find consensus

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Write consensus sequence for the following multiple alignment. Use IUPAC nucleotide codes in a table below for ambiguity positions. Example: ATGCATGC.

Hint: Use N (any base) when you meet each of four nucleotides in the column.

Multiple sequence alignment of four short sequences and the table showing IUPAC nucleotide codes

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