Natural scienceBioinformaticsDNA sequencingIllumina

Illumina quality control

Theory

Preprocessing programs

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Match common used tools with their application.

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FastQC
MultiQC
FastQ Screen
Trimmomatic
Musket
Overview of read quality
Error correction in sequencing data
Detection and filtering contamination
Aggregation of quality information across many samples
Removal of low-quality bases, adapter dimers, short sequences and so on
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