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Data Analysis in QIIME2

QIIME2 plugin documentation

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Usage: qiime vsearch [OPTIONS] COMMAND [ARGS]...

  Description: This plugin wraps the vsearch application, and provides methods
  for clustering and dereplicating features and sequences.

  Plugin website: https://github.com/qiime2/q2-vsearch

  Getting user support: Please post to the QIIME 2 forum for help with this
  plugin: https://forum.qiime2.org

Options:
  --version            Show the version and exit.
  --example-data PATH  Write example data and exit.
  --citations          Show citations and exit.
  --help               Show this message and exit.

Commands:
  cluster-features-closed-reference
                                  Closed-reference clustering of features.
  cluster-features-de-novo        De novo clustering of features.
  cluster-features-open-reference
                                  Open-reference clustering of features.
  dereplicate-sequences           Dereplicate sequences.
  fastq-stats                     Fastq stats with vsearch.
  merge-pairs                     Merge paired-end reads.
  uchime-denovo                   De novo chimera filtering with vsearch.
  uchime-ref                      Reference-based chimera filtering with
                                  vsearch.
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