Natural scienceBioinformaticsDNA sequencing

SNP-calling

Theory

Workflow of the SNP calling pipeline

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Match the tools with their application in SNP-calling pipeline

Match the items from left and right columns
FastQC
BWA
SAMtools mpileup
BCFtools
IGV
Visual exploration of results
Quality control analysis of NGS data
Summary of the coverage of mapped reads on a reference sequence
Mapping of read sequences against a reference genome
Identification of SNPs in VCF file
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