You've been asked to run Trimmomatic after a sequencing experiment (our sequencer is relatively new). You have two sequence files, input_forward.fq.gz and input_reverse.fq.gz, and a file with adapters — TruSeq3-PE.fa. We have to remove adapters with a maximum mismatch of 3 nucleotides, Phred Score 40 for palindromes and Phred Score 20 for any adapter sequence; for each read we want to cut 3 nucleotides off both start and end, then we want to slide through our reads with a window of 6 bases and trim it, if the average is below 20, and then evaluate the trimmed read and remove it if it is shorter than 72 nucleotides.
Please write a Trimmomatic command for this series of actions.